A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4066101



Internal ID20312093
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:62202826..62221663hg38UCSC Ensembl
chr2:62429961..62448798hg19UCSC Ensembl
Cytoband2p15
Allele length
AssemblyAllele length
hg3818838
hg1918838
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15867011
Samples
Known GenesB3GNT2, MIR5192
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4066101
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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