A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4061459



Internal ID20308718
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr2:23977978..23984936hg38UCSC Ensembl
chr2:24200848..24207806hg19UCSC Ensembl
Cytoband2p23.3
Allele length
AssemblyAllele length
hg386959
hg196959
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15868134
Samples
Known GenesUBXN2A
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4061459
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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