A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4058817



Internal ID20182074
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:222518357..222529871hg38UCSC Ensembl
chr1:222691699..222703213hg19UCSC Ensembl
Cytoband1q41
Allele length
AssemblyAllele length
hg3811515
hg1911515
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15847364
Samples
Known GenesHHIPL2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4058817
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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