A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4057681



Internal ID20181258
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:150272079..150274806hg38UCSC Ensembl
chr1:150244482..150247211hg19UCSC Ensembl
Cytoband1q21.2
Allele length
AssemblyAllele length
hg382728
hg192730
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15855279
Samples
Known GenesC1orf54
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4057681
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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