A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4051226



Internal ID19830008
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:24186475..24838357hg38UCSC Ensembl
chrX:24204592..24856474hg19UCSC Ensembl
CytobandXp22.11
Allele length
AssemblyAllele length
hg38651883
hg19651883
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15987914
Samples
Known GenesPCYT1B, PDK3, POLA1, SCARNA23, SUPT20HL1, SUPT20HL2, ZFX
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4051226
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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