A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4049988



Internal ID19829130
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:28611052..28613097hg38UCSC Ensembl
chr1:28937564..28939609hg19UCSC Ensembl
Cytoband1p35.3
Allele length
AssemblyAllele length
hg382046
hg192046
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15849613
Samples
Known GenesTAF12
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4049988
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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