A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4044789



Internal ID20172121
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:36895980..36965225hg38UCSC Ensembl
chr1:37361581..37430826hg19UCSC Ensembl
Cytoband1p34.3
Allele length
AssemblyAllele length
hg3869246
hg1969246
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15966798
Samples
Known GenesGRIK3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4044789
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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