A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4037586



Internal ID20167136
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:45164331..45181853hg38UCSC Ensembl
chr1:45630003..45647525hg19UCSC Ensembl
Cytoband1p34.1
Allele length
AssemblyAllele length
hg3817523
hg1917523
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15851992
Samples
Known GenesZSWIM5
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4037586
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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