Variant Details

Variant: nsv4035487

Internal ID

20165649

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
	chrY:56673215..56771271	hg38	UCSC Ensembl
	chrY:58819600..58917656	hg19	UCSC Ensembl

Cytoband

Yq12

Allele length

Assembly	Allele length
hg38	98057
hg19	98057

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv15787030, nssv15787044, nssv15787184, nssv15787140, nssv15787058, nssv15787123, nssv15787200, nssv15787104, nssv15787090, nssv15787143, nssv15787084, nssv15787013, nssv15787052, nssv15787036, nssv15787226, nssv15787066, nssv15787110, nssv15787035, nssv15787063, nssv15786961, nssv15787212, nssv15787138, nssv15787208, nssv15787172, nssv15787217, nssv15787192, nssv15787174, nssv15787165, nssv15786960, nssv15786954, nssv15787023, nssv15787027, nssv15787182, nssv15787051, nssv15786992, nssv15787168, nssv15787067, nssv15787002, nssv15787205, nssv15787181, nssv15786995, nssv15787147, nssv15787046, nssv15787243, nssv15786956, nssv15787230, nssv15787093, nssv15787209, nssv15787164, nssv15787196, nssv15786964, nssv15787213, nssv15787224, nssv15786976, nssv15787175, nssv15786973, nssv15787126, nssv15787198, nssv15786981, nssv15787075, nssv15787069, nssv15787111, nssv15787083, nssv15787146, nssv15787024, nssv15787025, nssv15786989, nssv15786974, nssv15786979, nssv15786957, nssv15787109, nssv15787076, nssv15787094, nssv15787156, nssv15786988, nssv15787074, nssv15787219, nssv15786975, nssv15787231, nssv15786987, nssv15786990, nssv15787214, nssv15787045, nssv15786991, nssv15787100, nssv15787034, nssv15787197, nssv15787237, nssv15787080, nssv15787040, nssv15786966, nssv15787139, nssv15787225, nssv15787159, nssv15787241, nssv15787009, nssv15787161, nssv15787095, nssv15787228, nssv15786986, nssv15787195, nssv15787033, nssv15787236, nssv15787050, nssv15786955, nssv15787239, nssv15787125, nssv15787124, nssv15787169, nssv15787049, nssv15787204, nssv15787191, nssv15786962, nssv15787107, nssv15786969, nssv15787129, nssv15787155, nssv15786983, nssv15787097, nssv15787079, nssv15787037, nssv15787028, nssv15787003, nssv15787041, nssv15787218, nssv15787008, nssv15787059, nssv15787113, nssv15787235, nssv15786971, nssv15787153, nssv15787011, nssv15787136, nssv15787240, nssv15787206, nssv15787134, nssv15787056, nssv15787016, nssv15787038, nssv15787233, nssv15786968, nssv15787171, nssv15786958, nssv15787144, nssv15787081, nssv15787158, nssv15786972, nssv15787227, nssv15787117, nssv15787118, nssv15786996, nssv15787207, nssv15786963, nssv15787006, nssv15786985, nssv15787060, nssv15787005, nssv15787019, nssv15787152, nssv15787071, nssv15787039, nssv15787099, nssv15786967, nssv15787179, nssv15787116, nssv15787096, nssv15787015, nssv15787232, nssv15787091, nssv15787014, nssv15786994, nssv15786980, nssv15787167, nssv15787176, nssv15786959, nssv15787189, nssv15787119, nssv15787127, nssv15787183, nssv15787121, nssv15787102, nssv15787122, nssv15787042, nssv15787154, nssv15787148, nssv15786984, nssv15787211, nssv15786999, nssv15786953, nssv15787054, nssv15787170, nssv15787089, nssv15787032, nssv15786977, nssv15787151, nssv15787012, nssv15786982, nssv15786998, nssv15787053, nssv15786993, nssv15787135, nssv15787088, nssv15786965, nssv15787020, nssv15787017, nssv15786997, nssv15787133, nssv15787103, nssv15787057, nssv15786952, nssv15787087, nssv15787221, nssv15787112, nssv15787105, nssv15787026, nssv15787178, nssv15787128, nssv15787162, nssv15787061, nssv15787187, nssv15787160, nssv15787186, nssv15787163, nssv15787149, nssv15787043, nssv15786978, nssv15787242, nssv15786970, nssv15787120, nssv15787021, nssv15787062, nssv15787064, nssv15787004, nssv15787234, nssv15787222, nssv15787223, nssv15787106, nssv15787202, nssv15787082, nssv15787068, nssv15787203, nssv15787141, nssv15787055, nssv15787173, nssv15787010, nssv15787201, nssv15787072, nssv15787073, nssv15787244, nssv15787199, nssv15787132, nssv15787150, nssv15787130, nssv15787238, nssv15787157, nssv15787077, nssv15787229, nssv15787108, nssv15787086, nssv15787018, nssv15787131, nssv15787000, nssv15787177, nssv15787220, nssv15787180, nssv15787145, nssv15787115, nssv15787065, nssv15787190, nssv15787022, nssv15787085, nssv15787137, nssv15787188, nssv15787215, nssv15787092, nssv15787029, nssv15787007, nssv15787142, nssv15787098, nssv15787193, nssv15787078, nssv15787101, nssv15787070, nssv15787001, nssv15787031, nssv15787185, nssv15787048, nssv15787216, nssv15787114, nssv15787047, nssv15787166, nssv15787194, nssv15787210

Samples

Known Genes

Method

Sequencing

Analysis

SV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].

Platform

Comments

Reference

gnomAD_Structural_Variants

Pubmed ID

32461652

Accession Number(s)

nsv4035487

Frequency

Sample Size	10847
Observed Gain	0
Observed Loss	0
Observed Complex	0
Frequency	n/a