A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4034872



Internal ID19818543
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:11404641..12117114hg38UCSC Ensembl
chrX:11422761..12135233hg19UCSC Ensembl
CytobandXp22.2
Allele length
AssemblyAllele length
hg38712474
hg19712473
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15987868
Samples
Known GenesARHGAP6, MSL3
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID12345678
Accession Number(s)nsv4034872
Frequency
Sample Size10847
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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