A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv4034442



Internal ID20164916
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:56677023..56683505hg38UCSC Ensembl
chr1:57142696..57149178hg19UCSC Ensembl
Cytoband1p32.2
Allele length
AssemblyAllele length
hg386483
hg196483
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv15853110
Samples
Known GenesPRKAA2
MethodSequencing
AnalysisSV calls were generated using multi-algorithm consensus pipeline involving raw evidence assessment, filtering, clustering, genotyping, alternative allele structure resolution, and gene annotation. These methods are described in detail in the gnomAD-SV preprint [Collins*, Brand*, et al., bioRxiv (2019)|https://www.biorxiv.org/content/10.1101/578674v1], and are largely based on methods developed in [Werling et al., Nat. Genet. (2018)|https://www.ncbi.nlm.nih.gov/pubmed/29700473].
Platform
Comments
ReferencegnomAD_Structural_Variants
Pubmed ID32461652
Accession Number(s)nsv4034442
Frequency
Sample Size10847
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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