A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3627



Internal ID15201569
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr22:38952080..39000579hg38UCSC Ensembl
Outerchr22:39348085..39396584hg19UCSC Ensembl
Outerchr22:37678031..37726530hg18UCSC Ensembl
Outerchr22:37672585..37721084hg17UCSC Ensembl
Cytoband22q13.1
Allele length
AssemblyAllele length
hg3848500
hg1948500
hg1848500
hg1748500
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv11055, nssv10325, nssv9613
SamplesNA18507, NA18956, NA15510
Known GenesAPOBEC3A, APOBEC3A_B, APOBEC3B, APOBEC3B-AS1
MethodSequencing
AnalysisEnd-sequence pairs were mapped to the human genome assembly (hg17) using a previously described algorithm (Tuzun et al 2005)
PlatformCapillary
Comments
ReferenceKidd_et_al_2008
Pubmed ID18451855
Accession Number(s)nsv3627
Frequency
Sample Size9
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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