A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3418367



Internal ID19502656
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:140100662..140100721hg38UCSC Ensembl
chr7:139800462..139800521hg19UCSC Ensembl
Cytoband7q34
Allele length
AssemblyAllele length
hg3860
hg1960
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14766307, nssv14761736, nssv14771743, nssv14770384, nssv14764986, nssv14757324, nssv14758489
SamplesCHM13, HG04217, CHM1, HG02818, HG01352, NA19240, HG00514
Known GenesKDM7A
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3418367
Frequency
Sample Size14
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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