A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3415830



Internal ID19500119
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:36394634..36394634hg38UCSC Ensembl
chr7:36434243..36434243hg19UCSC Ensembl
Cytoband7p14.2
Allele length
AssemblyAllele length
hg38315
hg19315
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14742870, nssv14749793, nssv14747202
SamplesHG02059, NA19434, HG00514
Known GenesANLN
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3415830
Frequency
Sample Size14
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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