A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3414572



Internal ID19845548
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:138707171..138707171hg38UCSC Ensembl
chr7:138391916..138391916hg19UCSC Ensembl
Cytoband7q34
Allele length
AssemblyAllele length
hg38129
hg19129
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14755684, nssv14762653, nssv14762538
SamplesCHM13, NA12878, HG00733
Known GenesATP6V0A4
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3414572
Frequency
Sample Size14
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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