A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3414302



Internal ID19845279
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:1668860..1669155hg38UCSC Ensembl
chrX:1787753..1788048hg19UCSC Ensembl
CytobandXp22.33
Allele length
AssemblyAllele length
hg38296
hg19296
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14723155, nssv14730470, nssv14731682, nssv14718501, nssv14715674, nssv14729711, nssv14728821
SamplesCHM13, NA12878, HG02818, HX1, NA19434, NA19240, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a Alu insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3414302
Frequency
Sample Size14
Observed Gain0
Observed Loss7
Observed Complex0
Frequencyn/a


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