A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3412481



Internal ID19496771
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr8:30388399..30388399hg38UCSC Ensembl
chr8:30245915..30245915hg19UCSC Ensembl
Cytoband8p12
Allele length
AssemblyAllele length
hg38403
hg19403
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14765414, nssv14766079, nssv14758300, nssv14752064, nssv14768315, nssv14766980, nssv14759324, nssv14759029
SamplesHG02106, HG04217, HG00268, NA12878, HG02818, HX1, HG01352, HG00733
Known GenesRBPMS
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3412481
Frequency
Sample Size14
Observed Gain8
Observed Loss0
Observed Complex0
Frequencyn/a


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