A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3411816



Internal ID19842792
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:41169401..41225400hg38UCSC Ensembl
Cytoband
Allele length
AssemblyAllele length
hg3856000
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14789013, nssv14777122, nssv14783018, nssv14782448, nssv14778099, nssv14778741, nssv14777817
SamplesHG02106, HG04217, HG00268, HG02059, HG01352, NA19434, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3411816
Frequency
Sample Size14
Observed Gain7
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer