A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3411088



Internal ID19495378
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:52511001..52523800hg38UCSC Ensembl
chrX:52539978..52552809hg19UCSC Ensembl
CytobandXp11.22
Allele length
AssemblyAllele length
hg3812800
hg1912832
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14800601, nssv14792906, nssv14805751, nssv14795264, nssv14807722
SamplesHG02106, HG00268, HG02818, NA19434, HG00733
Known GenesXAGE1A, XAGE1B, XAGE1C, XAGE1D, XAGE1E
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3411088
Frequency
Sample Size14
Observed Gain5
Observed Loss0
Observed Complex0
Frequencyn/a


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