A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3409450



Internal ID19840426
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:66334401..66377200hg38UCSC Ensembl
chr9:42143968..42187347hg19UCSC Ensembl
Cytoband9p12
Allele length
AssemblyAllele length
hg3842800
hg1943380
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14786620, nssv14790269, nssv14777894, nssv14773416, nssv14773965, nssv14778028, nssv14775504, nssv14774409, nssv14790513, nssv14788166
SamplesCHM13, HG02106, HG04217, HG00268, HG02818, HX1, HG02059, HG01352, NA19434, NA19240
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3409450
Frequency
Sample Size14
Observed Gain10
Observed Loss0
Observed Complex0
Frequencyn/a


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