A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3408883



Internal ID19839859
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:70146859..70147181hg38UCSC Ensembl
chr9:72761775..72762097hg19UCSC Ensembl
Cytoband9q21.12
Allele length
AssemblyAllele length
hg38323
hg19323
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14731687, nssv14712139
SamplesCHM1, HG01352
Known GenesMAMDC2
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a Alu insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3408883
Frequency
Sample Size14
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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