A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3408402



Internal ID19839378
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:118443248..118443248hg38UCSC Ensembl
chr7:118083302..118083302hg19UCSC Ensembl
Cytoband7q31.31
Allele length
AssemblyAllele length
hg38321
hg19321
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14770473, nssv14760771, nssv14761368, nssv14760173, nssv14764568, nssv14770347, nssv14760651, nssv14764423, nssv14753421
SamplesHG04217, CHM1, HG00268, NA12878, HG02818, NA19434, NA19240, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3408402
Frequency
Sample Size14
Observed Gain9
Observed Loss0
Observed Complex0
Frequencyn/a


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