A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3408210



Internal ID19839186
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:17719178..17719178hg38UCSC Ensembl
chrX:17737298..17737298hg19UCSC Ensembl
CytobandXp22.13
Allele length
AssemblyAllele length
hg38396
hg19396
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14807411
SamplesHG02106
Known GenesNHS
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3408210
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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