A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3407996



Internal ID19838972
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:66229601..66258600hg38UCSC Ensembl
chr9:42262412..42291612hg19UCSC Ensembl
Cytoband9p12
Allele length
AssemblyAllele length
hg3829000
hg1929201
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14785610, nssv14775620, nssv14773930, nssv14779839, nssv14778122, nssv14773913, nssv14781232
SamplesHG02106, HG04217, HG00268, HG02818, HX1, HG01352, NA19434
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3407996
Frequency
Sample Size14
Observed Gain7
Observed Loss0
Observed Complex0
Frequencyn/a


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