A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3407483



Internal ID19838459
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:152674761..152674761hg38UCSC Ensembl
chr7:152371846..152371846hg19UCSC Ensembl
Cytoband7q36.1
Allele length
AssemblyAllele length
hg3886
hg1986
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14757208, nssv14761271, nssv14767306, nssv14756763, nssv14765949, nssv14757978, nssv14763904, nssv14754775, nssv14753805, nssv14759495, nssv14757370, nssv14767959, nssv14762108
SamplesCHM13, HG02106, CHM1, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesXRCC2
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3407483
Frequency
Sample Size14
Observed Gain13
Observed Loss0
Observed Complex0
Frequencyn/a


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