A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3406360



Internal ID19490651
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr8:65655957..65655957hg38UCSC Ensembl
chr8:66568192..66568192hg19UCSC Ensembl
Cytoband8q13.1
Allele length
AssemblyAllele length
hg3864
hg1964
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14766398, nssv14769783, nssv14768742
SamplesHG00268, NA12878, NA19434
Known GenesMTFR1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3406360
Frequency
Sample Size14
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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