A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3405236



Internal ID19836212
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:99410377..99410377hg38UCSC Ensembl
chr7:99008000..99008000hg19UCSC Ensembl
Cytoband7q22.1
Allele length
AssemblyAllele length
hg38330
hg19330
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14751669, nssv14743618, nssv14744936, nssv14743414
SamplesHG02818, HX1, HG01352, HG00514
Known GenesBUD31
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3405236
Frequency
Sample Size14
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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