A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3405227



Internal ID19489517
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:73836553..73836630hg38UCSC Ensembl
chr7:73250883..73250960hg19UCSC Ensembl
Cytoband7q11.23
Allele length
AssemblyAllele length
hg3878
hg1978
Variant TypeCNV sva deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14813324, nssv14812499, nssv14812902, nssv14813118, nssv14813767, nssv14814322, nssv14814126, nssv14813956, nssv14814819
SamplesHG04217, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, HG00733
Known GenesWBSCR27
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a SVA insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3405227
Frequency
Sample Size14
Observed Gain0
Observed Loss9
Observed Complex0
Frequencyn/a


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