A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3405098



Internal ID19836074
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:97903101..97916800hg38UCSC Ensembl
chr7:97532413..97546112hg19UCSC Ensembl
Cytoband7q21.3
Allele length
AssemblyAllele length
hg3813700
hg1913700
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14746977, nssv14737217, nssv14744809, nssv14747807, nssv14733169, nssv14740051, nssv14746501, nssv14749340, nssv14742660, nssv14744897, nssv14742155
SamplesHG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HG02059, NA19434, NA19240, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3405098
Frequency
Sample Size14
Observed Gain11
Observed Loss0
Observed Complex0
Frequencyn/a


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