A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3404855



Internal ID19835831
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:10501..22600hg38UCSC Ensembl
chr9:10501..22600hg19UCSC Ensembl
Cytoband9p24.3
Allele length
AssemblyAllele length
hg3812100
hg1912100
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14788952, nssv14781000, nssv14791151
SamplesHG04217, HG02818, HG00514
Known GenesDDX11L5, WASH1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3404855
Frequency
Sample Size14
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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