A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3404796



Internal ID19835772
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:138294331..138294331hg38UCSC Ensembl
chr11:113340..113340hg19UCSC Ensembl
Cytoband11p15.5
Allele length
AssemblyAllele length
hg38553
hg19553
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14809000, nssv14811776, nssv14802415, nssv14792736, nssv14804450, nssv14803024, nssv14809688, nssv14807593, nssv14809768, nssv14811572, nssv14801776
SamplesCHM13, HG02106, CHM1, HG00268, NA12878, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3404796
Frequency
Sample Size14
Observed Gain11
Observed Loss0
Observed Complex0
Frequencyn/a


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