A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3404237



Internal ID19488527
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:21731509..21731509hg38UCSC Ensembl
chrX:21749627..21749627hg19UCSC Ensembl
CytobandXp22.12
Allele length
AssemblyAllele length
hg3854
hg1954
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14805280, nssv14795928, nssv14810042
SamplesHG02106, NA12878, HG00514
Known GenesSMPX
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3404237
Frequency
Sample Size14
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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