A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3402928



Internal ID19487219
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:68230201..68415500hg38UCSC Ensembl
chr9:70845117..71030416hg19UCSC Ensembl
Cytoband9q21.11
Allele length
AssemblyAllele length
hg38185300
hg19185300
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14789178, nssv14784504, nssv14783240, nssv14772872, nssv14783284, nssv14777002, nssv14791991, nssv14790305, nssv14773921
SamplesHG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HG01352, NA19434, HG00514
Known GenesCBWD3, CBWD5, FOXD4L3, PGM5, PGM5-AS1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3402928
Frequency
Sample Size14
Observed Gain9
Observed Loss0
Observed Complex0
Frequencyn/a


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