A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3402879



Internal ID19833856
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:9730209..9730378hg38UCSC Ensembl
chrX:9698249..9698418hg19UCSC Ensembl
CytobandXp22.2
Allele length
AssemblyAllele length
hg38170
hg19170
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14810020, nssv14803572, nssv14796596, nssv14805958, nssv14807971, nssv14810700, nssv14808752, nssv14801750
SamplesHG02106, CHM1, NA12878, HX1, HG02059, HG01352, HG00733, HG00514
Known GenesGPR143
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3402879
Frequency
Sample Size14
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


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