A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3401847



Internal ID19832823
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:137145034..137145090hg38UCSC Ensembl
chr9:140039486..140039542hg19UCSC Ensembl
Cytoband9q34.3
Allele length
AssemblyAllele length
hg3857
hg1957
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14775520, nssv14789520, nssv14788801
SamplesHG02106, CHM1, HX1
Known GenesGRIN1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3401847
Frequency
Sample Size14
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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