A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3401315



Internal ID19485606
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr8:39006542..39006542hg38UCSC Ensembl
chr8:38864061..38864061hg19UCSC Ensembl
Cytoband8p11.22
Allele length
AssemblyAllele length
hg38313
hg19313
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14761740, nssv14758020, nssv14764881, nssv14765106, nssv14752617, nssv14755088
SamplesHG02106, HG04217, CHM1, HG00268, NA12878, HX1
Known GenesADAM9
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3401315
Frequency
Sample Size14
Observed Gain6
Observed Loss0
Observed Complex0
Frequencyn/a


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