A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3401027



Internal ID19832004
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chrX:109110004..109114160hg38UCSC Ensembl
chrX:108353234..108357390hg19UCSC Ensembl
CytobandXq22.3
Allele length
AssemblyAllele length
hg384157
hg194157
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14799372, nssv14811480
SamplesNA12878, HG02818
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3401027
Frequency
Sample Size14
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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