A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3401026



Internal ID19832003
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:87719801..87731700hg38UCSC Ensembl
chr7:87349117..87361016hg19UCSC Ensembl
Cytoband7q21.12
Allele length
AssemblyAllele length
hg3811900
hg1911900
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14738861
SamplesHG01352
Known GenesRUNDC3B
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3401026
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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