A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3400405



Internal ID19831382
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:128798318..128798318hg38UCSC Ensembl
chr7:128438372..128438372hg19UCSC Ensembl
Cytoband7q32.1
Allele length
AssemblyAllele length
hg38764
hg19764
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14768624, nssv14754313, nssv14755938, nssv14759698, nssv14754099, nssv14768638, nssv14757752, nssv14771892, nssv14768574, nssv14756610, nssv14754948, nssv14757314, nssv14753157, nssv14757712
SamplesCHM13, HG02106, HG04217, CHM1, HG00268, NA12878, HG02818, HX1, HG02059, HG01352, NA19434, NA19240, HG00733, HG00514
Known GenesCCDC136
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3400405
Frequency
Sample Size14
Observed Gain14
Observed Loss0
Observed Complex0
Frequencyn/a


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