A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3400164



Internal ID19831141
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:44871105..44871178hg38UCSC Ensembl
chr7:44910704..44910777hg19UCSC Ensembl
Cytoband7p13
Allele length
AssemblyAllele length
hg3874
hg1974
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14732382, nssv14737506, nssv14751614, nssv14747535, nssv14736922, nssv14739762, nssv14740619, nssv14739744
SamplesCHM13, HG02106, HG00268, NA12878, HG02818, NA19434, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3400164
Frequency
Sample Size14
Observed Gain0
Observed Loss8
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer