A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3399394



Internal ID19830371
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr9:138233254..138233254hg38UCSC Ensembl
chr9:141123704..141123704hg19UCSC Ensembl
Cytoband9q34.3
Allele length
AssemblyAllele length
hg38226
hg19226
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14801645
SamplesCHM13
Known GenesFAM157B
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3399394
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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