A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3399321



Internal ID19830298
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr8:30246699..30246775hg38UCSC Ensembl
chr8:30104215..30104291hg19UCSC Ensembl
Cytoband8p12
Allele length
AssemblyAllele length
hg3877
hg1977
Variant TypeCNV sva deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14812502, nssv14812908, nssv14814331, nssv14812323, nssv14813123, nssv14813521, nssv14813775, nssv14814578, nssv14814834
SamplesHG02106, CHM1, HG00268, NA12878, HG02818, HG01352, NA19434, NA19240, HG00733
Known GenesMIR548O2
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a SVA insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3399321
Frequency
Sample Size14
Observed Gain0
Observed Loss9
Observed Complex0
Frequencyn/a


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