A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3397061



Internal ID19481352
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr6:158169680..158169680hg38UCSC Ensembl
chr6:158590712..158590712hg19UCSC Ensembl
Cytoband6q25.3
Allele length
AssemblyAllele length
hg38104
hg19104
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14742586, nssv14738320, nssv14741034, nssv14739727
SamplesHX1, HG02059, NA19434, HG00514
Known GenesGTF2H5
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3397061
Frequency
Sample Size14
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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