A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3390874



Internal ID19821851
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:186433217..186433492hg38UCSC Ensembl
chr4:187354371..187354646hg19UCSC Ensembl
Cytoband4q35.2
Allele length
AssemblyAllele length
hg38276
hg19276
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14702072, nssv14692890, nssv14695969, nssv14697494, nssv14701046
SamplesNA12878, HG02059, NA19434, NA19240, HG00733
Known GenesF11-AS1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3390874
Frequency
Sample Size14
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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