A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3390020



Internal ID19474311
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:138567905..138567905hg38UCSC Ensembl
chr5:137903594..137903594hg19UCSC Ensembl
Cytoband5q31.2
Allele length
AssemblyAllele length
hg381123
hg191123
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14712900
SamplesNA19240
Known GenesHSPA9
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3390020
Frequency
Sample Size14
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer