A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3389899



Internal ID19820876
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr7:104974753..104975088hg38UCSC Ensembl
chr7:104615200..104615535hg19UCSC Ensembl
Cytoband7q22.3
Allele length
AssemblyAllele length
hg38336
hg19336
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14711789, nssv14692828, nssv14709580, nssv14703080, nssv14700023
SamplesHX1, HG01352, NA19434, HG00733, HG00514
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a Alu insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3389899
Frequency
Sample Size14
Observed Gain0
Observed Loss5
Observed Complex0
Frequencyn/a


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