A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3386054



Internal ID19817032
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:151166575..151166575hg38UCSC Ensembl
chr5:150546136..150546136hg19UCSC Ensembl
Cytoband5q33.1
Allele length
AssemblyAllele length
hg382473
hg192473
Variant TypeCNV sva insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14712185, nssv14713822, nssv14730249
SamplesCHM13, HG04217, HG00268
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3386054
Frequency
Sample Size14
Observed Gain3
Observed Loss0
Observed Complex0
Frequencyn/a


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