A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3385209



Internal ID19816187
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr4:38807804..38808028hg38UCSC Ensembl
chr4:38809425..38809649hg19UCSC Ensembl
Cytoband4p14
Allele length
AssemblyAllele length
hg38225
hg19225
Variant TypeCNV sva deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14814088, nssv14814263, nssv14812118
SamplesCHM13, NA12878, HX1
Known Genes
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
CommentsAbsence of a SVA insertion that is present in the reference
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3385209
Frequency
Sample Size14
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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