A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3381849



Internal ID19812828
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:126584672..126584672hg38UCSC Ensembl
chr5:125920364..125920364hg19UCSC Ensembl
Cytoband5q23.2
Allele length
AssemblyAllele length
hg38838
hg19838
Variant TypeCNV alu insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14719714, nssv14723997
SamplesHG02818, NA19240
Known GenesALDH7A1
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3381849
Frequency
Sample Size14
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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