A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3380568



Internal ID19464861
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr5:132208408..132208408hg38UCSC Ensembl
chr5:131544101..131544101hg19UCSC Ensembl
Cytoband5q31.1
Allele length
AssemblyAllele length
hg3857
hg1957
Variant TypeCNV insertion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14722509, nssv14726162, nssv14717269, nssv14721304
SamplesHG00268, HX1, NA19240, HG00733
Known GenesP4HA2
MethodSequencing
AnalysisRead and contig alignments were done with BLASR. The Celera assembler (8.3rc2) was used to assemble RS II samples (CHM1, CHM13, HG00514, HG00733, NA19240, HG02818, NA19434, HG01352, HG02059, NA12878, and HG04217, and Canu (1.7) was used for Sequel samples (HG02106 and HG00268). Variant calling was performed with SMRT-SV (10.1101/gr.214007.116).
PlatformPacBio RS II P6C4, PacBio Sequel v2.1
Comments
ReferenceAudano_et_al_2019
Pubmed ID30661756
Accession Number(s)nsv3380568
Frequency
Sample Size14
Observed Gain4
Observed Loss0
Observed Complex0
Frequencyn/a


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